Other software

This page provides links to other software packages which are commonly used with APBS-PDB2PQR.

Calculation setup and visualization

See Visualizing results.

Dynamics simulations

The iAPBS library was developed to facilitate the integration of APBS with other molecular simulation packages. This library has enabled the integration of APBS with several molecular dynamics packages, including NAMD, AMBER, and CHARMM.

APBS is also used directly by Brownian dynamics software such as SDA and BrownDye.